recipe bioconductor-cqn

Conditional quantile normalization

Homepage

https://bioconductor.org/packages/3.12/bioc/html/cqn.html

License

Artistic-2.0

Recipe

/bioconductor-cqn/meta.yaml

Links

biotools: cqn

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

package bioconductor-cqn

Versions

1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.1-0,  1.28.0-0,  1.26.0-0,  1.24.0-0, 

1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.1-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends

• bioconductor-preprocesscore >=1.52.0,<1.53.0

• r-base >=4.0,<4.1.0a0

• r-mclust

• r-nor1mix

• r-quantreg

Required By

• bioconductor-exomepeak2

• bioconductor-tweedeseq

• bioconductor-knowseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cqn

and update with:

conda update bioconductor-cqn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cqn:<tag>

(see bioconductor-cqn/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cqn/README.html)