recipe bioconductor-cqn

Conditional quantile normalization

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/cqn.html

License:

Artistic-2.0

Recipe:

/bioconductor-cqn/meta.yaml

Links:

biotools: cqn

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

package bioconductor-cqn

Versions:

1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.1-0, 

1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.1-0,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends:

• bioconductor-preprocesscore >=1.56.0,<1.57.0

• r-base >=4.1,<4.2.0a0

• r-mclust

• r-nor1mix

• r-quantreg

Required By:

• bioconductor-tweedeseq

• bioconductor-knowseq

• bioconductor-exomepeak2

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-cqn

and update with:

conda update bioconductor-cqn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cqn:<tag>

(see bioconductor-cqn/tags for valid values for <tag>)

Download stats

Link to this page

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