recipe bioconductor-crimage

CRImage a package to classify cells and calculate tumour cellularity







biotools: crimage, doi: 10.1126/scitranslmed.3004330

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

package bioconductor-crimage

(downloads) docker_bioconductor-crimage



depends bioconductor-acgh:


depends bioconductor-dnacopy:


depends bioconductor-ebimage:


depends r-base:


depends r-e1071:

depends r-foreach:

depends r-mass:

depends r-sgeostat:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-crimage

and update with::

   mamba update bioconductor-crimage

To create a new environment, run:

mamba create --name myenvname bioconductor-crimage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-crimage/tags`_ for valid values for ``<tag>``)

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