recipe bioconductor-crossmeta

Implements cross-platform and cross-species meta-analyses of Affymentrix, Illumina, and Agilent microarray data. This package automates common tasks such as downloading, normalizing, and annotating raw GEO data. The user then selects control and treatment samples in order to perform differential expression/pathway analyses for all comparisons. After analysing each contrast seperately, the user can select tissue sources for each contrast and specify any tissue sources that should be grouped for the subsequent meta-analyses. Finally, effect size and pathway meta-analyses can proceed and the results graphically explored.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/crossmeta.html

License

MIT + file LICENSE

Recipe

/bioconductor-crossmeta/meta.yaml

package bioconductor-crossmeta

(downloads) docker_bioconductor-crossmeta

Versions

1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-crossmeta

and update with:

conda update bioconductor-crossmeta

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-crossmeta:<tag>

(see bioconductor-crossmeta/tags for valid values for <tag>)