recipe bioconductor-ctdata

Data companion to CTexploreR






Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

package bioconductor-ctdata

(downloads) docker_bioconductor-ctdata



depends bioconductor-experimenthub:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ctdata

and update with::

   mamba update bioconductor-ctdata

To create a new environment, run:

mamba create --name myenvname bioconductor-ctdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-ctdata/tags`_ for valid values for ``<tag>``)

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