recipe bioconductor-ctsge

Methodology for supervised clustering of potentially many predictor variables, such as genes etc., in time series datasets Provides functions that help the user assigning genes to predefined set of model profiles.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ctsGE.html

License

GPL-2

Recipe

/bioconductor-ctsge/meta.yaml

Links

biotools: ctsge, doi: 10.1093/bioinformatics/btx116

package bioconductor-ctsge

(downloads) docker_bioconductor-ctsge

Versions

1.10.0-0, 1.8.1-0, 1.8.0-0, 1.6.1-0, 1.4.0-0

Depends bioconductor-limma

>=3.40.0,<3.41.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ccapp

Depends r-ggplot2

Depends r-reshape2

Depends r-shiny

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ctsge

and update with:

conda update bioconductor-ctsge

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ctsge:<tag>

(see bioconductor-ctsge/tags for valid values for <tag>)