recipe bioconductor-cummerbund

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/cummeRbund.html

License

Artistic-2.0

Recipe

/bioconductor-cummerbund/meta.yaml

Links

biotools: cummerbund, doi: 10.1038/nprot.2012.016

package bioconductor-cummerbund

Versions

2.26.0-1, 2.24.0-0, 2.22.0-0, 2.20.0-0, 2.18.0-0, 2.16.0-0, 2.12.1-1, 2.12.1-0, 2.8.2-1, 2.8.2-0

Depends

• bioconductor-biobase >=2.44.0,<2.45.0

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-gviz >=1.28.0,<1.29.0

• bioconductor-rtracklayer >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• r-base >=3.6,<3.7.0a0

• r-fastcluster

• r-ggplot2

• r-plyr

• r-reshape2

• r-rsqlite

Required By

• bioconductor-splicer

• bioconductor-meshr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cummerbund

and update with:

conda update bioconductor-cummerbund

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cummerbund:<tag>

(see bioconductor-cummerbund/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cummerbund/README.html)