-
recipe
bioconductor-cummerbund¶ Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/cummeRbund.html
- License
Artistic-2.0
- Recipe
- Links
biotools: cummerbund, doi: 10.1038/nprot.2012.016
-
package
bioconductor-cummerbund¶ 
- Versions
2.24.0-0, 2.22.0-0, 2.20.0-0, 2.18.0-0, 2.16.0-0, 2.12.1-1, 2.12.1-0, 2.8.2-1, 2.8.2-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-gviz
>=1.26.0,<1.27.0
- Depends bioconductor-rtracklayer
>=1.42.0,<1.43.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-fastcluster
- Depends r-ggplot2
- Depends r-plyr
- Depends r-reshape2
- Depends r-rsqlite
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cummerbund
and update with:
conda update bioconductor-cummerbund
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cummerbund:<tag>
(see bioconductor-cummerbund/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cummerbund/README.html)