recipe bioconductor-cummerbund

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/cummeRbund.html

License

Artistic-2.0

Recipe

/bioconductor-cummerbund/meta.yaml

Links

biotools: cummerbund, doi: 10.1038/nprot.2012.016

package bioconductor-cummerbund

(downloads) docker_bioconductor-cummerbund

Versions

2.24.0-0, 2.22.0-0, 2.20.0-0, 2.18.0-0, 2.16.0-0, 2.12.1-1, 2.12.1-0, 2.8.2-1, 2.8.2-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-fastcluster

Depends r-ggplot2

Depends r-plyr

Depends r-reshape2

Depends r-rsqlite

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cummerbund

and update with:

conda update bioconductor-cummerbund

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cummerbund:<tag>

(see bioconductor-cummerbund/tags for valid values for <tag>)