- recipe bioconductor-cummerbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/cummeRbund.html
- License
Artistic-2.0
- Recipe
- Links
biotools: cummerbund, doi: 10.1038/nprot.2012.016
Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.
- package bioconductor-cummerbund¶
-
- Versions
2.36.0-0
,2.34.0-0
,2.32.0-1
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-1
,2.24.0-0
,2.22.0-0
,2.36.0-0
,2.34.0-0
,2.32.0-1
,2.32.0-0
,2.30.0-0
,2.28.0-0
,2.26.0-1
,2.24.0-0
,2.22.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-0
,2.12.1-1
,2.12.1-0
,2.8.2-1
,2.8.2-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cummerbund
and update with:
conda update bioconductor-cummerbund
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cummerbund:<tag>
(see bioconductor-cummerbund/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cummerbund/README.html)