recipe bioconductor-cummerbund

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

Homepage

https://bioconductor.org/packages/3.11/bioc/html/cummeRbund.html

License

Artistic-2.0

Recipe

/bioconductor-cummerbund/meta.yaml

Links

biotools: cummerbund, doi: 10.1038/nprot.2012.016

Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data. In addition, provides numerous plotting functions for commonly used visualizations.

package bioconductor-cummerbund

Versions

2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.12.1-1, 

2.30.0-0,  2.28.0-0,  2.26.0-1,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-0,  2.16.0-0,  2.12.1-1,  2.12.1-0,  2.8.2-1,  2.8.2-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

• r-fastcluster

• r-ggplot2

• r-plyr

• r-reshape2

• r-rsqlite

Required By

• bioconductor-meshr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cummerbund

and update with:

conda update bioconductor-cummerbund

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cummerbund:<tag>

(see bioconductor-cummerbund/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-cummerbund/README.html)