recipe bioconductor-curatedadipoarray

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/curatedAdipoArray.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-curatedadipoarray/meta.yaml

A curated dataset of Microarrays samples. The samples are MDI- induced pre-adipocytes (3T3-L1) at different time points/stage of differentiation under different types of genetic (knockdown/overexpression) and pharmacological (drug treatment) perturbations. The package documents the data collection and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

package bioconductor-curatedadipoarray

(downloads) docker_bioconductor-curatedadipoarray

versions:
1.18.0-0,  1.14.0-0,  1.12.0-0,  1.9.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0, 

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.9.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.1.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-curatedadipoarray

and update with::

   mamba update bioconductor-curatedadipoarray

To create a new environment, run:

mamba create --name myenvname bioconductor-curatedadipoarray

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-curatedadipoarray:<tag>

(see `bioconductor-curatedadipoarray/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-curatedadipoarray/README.html)