recipe bioconductor-curatedbreastdata

Curated breast cancer gene expression data with survival and treatment information

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/curatedBreastData.html

License:

GPL (>= 2)

Recipe:

/bioconductor-curatedbreastdata/meta.yaml

Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.

package bioconductor-curatedbreastdata

Versions:

2.26.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.18.0-0,  2.16.0-0,  2.14.0-0,  2.12.0-1, 

2.26.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.18.0-0,  2.16.0-0,  2.14.0-0,  2.12.0-1,  2.10.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-data-packages >=20221104

• bioconductor-impute >=1.72.0,<1.73.0

• curl

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-xml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-curatedbreastdata

and update with:

conda update bioconductor-curatedbreastdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-curatedbreastdata:<tag>

(see bioconductor-curatedbreastdata/tags for valid values for <tag>)

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