recipe bioconductor-curatedtcgadata

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/curatedTCGAData.html

License

Artistic-2.0

Recipe

/bioconductor-curatedtcgadata/meta.yaml

This package provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. It also links assay barcodes with patient identifiers, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire multi-'omics experiment.

package bioconductor-curatedtcgadata

(downloads) docker_bioconductor-curatedtcgadata

Versions

1.10.0-01.8.0-01.6.0-11.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-curatedtcgadata

and update with:

conda update bioconductor-curatedtcgadata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-curatedtcgadata:<tag>

(see bioconductor-curatedtcgadata/tags for valid values for <tag>)