- recipe bioconductor-curatedtcgadata
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/curatedTCGAData.html
- License:
Artistic-2.0
- Recipe:
This package provides publicly available data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment objects. MultiAssayExperiment integrates multiple assays (e.g., RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. It also links assay barcodes with patient identifiers, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire multi-'omics experiment.
- package bioconductor-curatedtcgadata¶
-
- Versions:
1.20.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.20.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-data-packages
>=20221106
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-hdf5array
>=1.26.0,<1.27.0
bioconductor-multiassayexperiment
>=1.24.0,<1.25.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-curatedtcgadata
and update with:
conda update bioconductor-curatedtcgadata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-curatedtcgadata:<tag>
(see bioconductor-curatedtcgadata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-curatedtcgadata/README.html)