- recipe bioconductor-cyanofilter
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/cyanoFilter.html
- License
MIT + file LICENSE
- Recipe
An approach to filter out and/or identify phytoplankton cells from all particles measured via flow cytometry pigment and cell complexity information. It does this using a sequence of one-dimensional gates on pre-defined channels measuring certain pigmentation and complexity. The package is especially tuned for cyanobacteria, but will work fine for phytoplankton communities where there is at least one cell characteristic that differentiates every phytoplankton in the community.
- package bioconductor-cyanofilter¶
-
- Versions
1.2.0-0
,1.0.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-flowclust
>=3.32.0,<3.33.0
bioconductor-flowcore
>=2.6.0,<2.7.0
bioconductor-flowdensity
>=1.28.0,<1.29.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-cyanofilter
and update with:
conda update bioconductor-cyanofilter
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-cyanofilter:<tag>
(see bioconductor-cyanofilter/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-cyanofilter/README.html)