recipe bioconductor-cydar

Identifies differentially abundant populations between samples and groups in mass cytometry data. Provides methods for counting cells into hyperspheres, controlling the spatial false discovery rate, and visualizing changes in abundance in the high-dimensional marker space.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/cydar.html

License

GPL-3

Recipe

/bioconductor-cydar/meta.yaml

package bioconductor-cydar

(downloads) docker_bioconductor-cydar

Versions

1.6.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocneighbors

>=1.0.0,<1.1.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-flowcore

>=1.48.0,<1.49.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-rcpp

Depends r-shiny

Depends r-viridis

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-cydar

and update with:

conda update bioconductor-cydar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-cydar:<tag>

(see bioconductor-cydar/tags for valid values for <tag>)