recipe bioconductor-cytopipelinegui

GUI's for visualization of flow cytometry data analysis pipelines



GPL (>=3) | file LICENSE



This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

package bioconductor-cytopipelinegui

(downloads) docker_bioconductor-cytopipelinegui



depends bioconductor-cytopipeline:


depends bioconductor-flowcore:


depends r-base:


depends r-ggplot2:

depends r-plotly:

depends r-shiny:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-cytopipelinegui

and update with::

   mamba update bioconductor-cytopipelinegui

To create a new environment, run:

mamba create --name myenvname bioconductor-cytopipelinegui

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-cytopipelinegui/tags`_ for valid values for ``<tag>``)

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