recipe bioconductor-ddpcrclust

The ddPCRclust algorithm can automatically quantify the CPDs of non-orthogonal ddPCR reactions with up to four targets. In order to determine the correct droplet count for each target, it is crucial to both identify all clusters and label them correctly based on their position. For more information on what data can be analyzed and how a template needs to be formatted, please check the vignette.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ddPCRclust.html

License

Artistic-2.0

Recipe

/bioconductor-ddpcrclust/meta.yaml

package bioconductor-ddpcrclust

(downloads) docker_bioconductor-ddpcrclust

Versions

1.2.0-0

Depends bioconductor-flowcore

>=1.48.0,<1.49.0

Depends bioconductor-flowdensity

>=1.16.0,<1.17.0

Depends bioconductor-flowpeaks

>=1.28.0,<1.29.0

Depends bioconductor-samspectral

>=1.36.0,<1.37.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-clue

Depends r-ggplot2

Depends r-openxlsx

Depends r-plotrix

Depends r-r.utils

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ddpcrclust

and update with:

conda update bioconductor-ddpcrclust

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ddpcrclust:<tag>

(see bioconductor-ddpcrclust/tags for valid values for <tag>)