recipe bioconductor-debcam

Deconvolution by Convex Analysis of Mixtures

Homepage

https://bioconductor.org/packages/3.11/bioc/html/debCAM.html

License

GPL-2

Recipe

/bioconductor-debcam/meta.yaml

An R package for fully unsupervised deconvolution of complex tissues. It provides basic functions to perform unsupervised deconvolution on mixture expression profiles by Convex Analysis of Mixtures (CAM) and some auxiliary functions to help understand the subpopulation-specific results. It also implements functions to perform supervised deconvolution based on prior knowledge of molecular markers, S matrix or A matrix. Combining molecular markers from CAM and from prior knowledge can achieve semi-supervised deconvolution of mixtures.

package bioconductor-debcam

(downloads) docker_bioconductor-debcam

Versions

1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-debcam

and update with:

conda update bioconductor-debcam

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-debcam:<tag>

(see bioconductor-debcam/tags for valid values for <tag>)