recipe bioconductor-debrowser

Interactive Differential Expresion Analysis Browser

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/debrowser.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-debrowser/meta.yaml

Bioinformatics platform containing interactive plots and tables for differential gene and region expression studies. Allows visualizing expression data much more deeply in an interactive and faster way. By changing the parameters, users can easily discover different parts of the data that like never have been done before. Manually creating and looking these plots takes time. With DEBrowser users can prepare plots without writing any code. Differential expression, PCA and clustering analysis are made on site and the results are shown in various plots such as scatter, bar, box, volcano, ma plots and Heatmaps.

package bioconductor-debrowser

Versions:

1.26.0-0,  1.22.1-0,  1.20.0-0,  1.18.2-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.2-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-apeglm >=1.20.0,<1.21.0

• bioconductor-clusterprofiler >=4.6.0,<4.7.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-dose >=3.24.0,<3.25.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-enrichplot >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-harman >=1.26.0,<1.27.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-org.mm.eg.db >=3.16.0,<3.17.0

• bioconductor-pathview >=1.38.0,<1.39.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-ashr

• r-base >=4.2,<4.3.0a0

• r-colourpicker

• r-dt

• r-ggplot2

• r-gplots

• r-heatmaply

• r-igraph

• r-jsonlite

• r-plotly

• r-rcolorbrewer

• r-rcurl

• r-reshape2

• r-shiny

• r-shinybs

• r-shinydashboard

• r-shinyjs

• r-stringi

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-debrowser

and update with:

conda update bioconductor-debrowser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-debrowser:<tag>

(see bioconductor-debrowser/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-debrowser/README.html)