recipe bioconductor-deconrnaseq

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/DeconRNASeq.html

License

GPL-2

Recipe

/bioconductor-deconrnaseq/meta.yaml

DeconSeq is an R package for deconvolution of heterogeneous tissues based on mRNA-Seq data. It modeled expression levels from heterogeneous cell populations in mRNA-Seq as the weighted average of expression from different constituting cell types and predicted cell type proportions of single expression profiles.

package bioconductor-deconrnaseq

(downloads) docker_bioconductor-deconrnaseq

Versions

1.30.0-0, 1.28.0-0, 1.26.0-1, 1.24.0-1, 1.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-deconrnaseq

and update with:

conda update bioconductor-deconrnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deconrnaseq:<tag>

(see bioconductor-deconrnaseq/tags for valid values for <tag>)