recipe bioconductor-decontam

Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,…). Requires DNA quantitation data or sequenced negative control samples.

Homepage:https://bioconductor.org/packages/3.8/bioc/html/decontam.html
License:Artistic-2.0
Recipe:/bioconductor-decontam/meta.yaml
package bioconductor-decontam

(downloads) docker_bioconductor-decontam

Versions:

1.2.1-0, 1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-decontam

and update with:

conda update bioconductor-decontam

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-decontam:<tag>

(see bioconductor-decontam/tags for valid values for <tag>)