bioconductor-decontam

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Simple statistical identification of contaminating sequence features in marker-gene or metagenomics data. Works on any kind of feature derived from environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,…). Requires DNA quantitation data or sequenced negative control samples.

Home https://bioconductor.org/packages/3.7/bioc/html/decontam.html
Versions 1.0.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-decontam

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-decontam

and update with:

conda update bioconductor-decontam

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-decontam.