recipe bioconductor-degseq

Identify Differentially Expressed Genes from RNA-seq data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/DEGseq.html

License

LGPL (>=2)

Recipe

/bioconductor-degseq/meta.yaml

Links

biotools: degseq, doi: 10.1093/bioinformatics/btp612

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

package bioconductor-degseq

Versions

1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.1-0,  1.34.1-0, 

1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.1-0,  1.34.1-0,  1.32.0-0,  1.30.0-0

Depends

• bioconductor-qvalue >=2.24.0,<2.25.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-degseq

and update with:

conda update bioconductor-degseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-degseq:<tag>

(see bioconductor-degseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-degseq/README.html)