recipe bioconductor-delayedarray

A unified framework for working transparently with on-disk and in-memory array-like datasets

Homepage

https://bioconductor.org/packages/3.11/bioc/html/DelayedArray.html

License

Artistic-2.0

Recipe

/bioconductor-delayedarray/meta.yaml

Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, and ordinary arrays and data frames.

package bioconductor-delayedarray

Versions

0.14.0-0,  0.12.0-0,  0.10.0-1,  0.8.0-0,  0.6.6-0,  0.4.1-0,  0.2.7-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

• r-matrix

• r-matrixstats

Required By

• bioconductor-rhdf5client

• scxa-plots

• bioconductor-summarizedexperiment

• bioconductor-singler

• bioconductor-biocsingular

• bioconductor-bigpint

• bioconductor-pcatools

• bioconductor-elmer

• bioconductor-scmerge

• bioconductor-methrix

• bioconductor-minfi

• bioconductor-bsseq

• bioconductor-vcfarray

• bioconductor-fraser

• bioconductor-dss

• bioconductor-gdsarray

• bioconductor-mbkmeans

• bioconductor-genomicscores

• bioconductor-batchelor

• bioconductor-celda

• r-garnett

• bioconductor-glmgampoi

• bioconductor-beachmat

• bioconductor-clusterexperiment

• bioconductor-signaturesearch

• bioconductor-celaref

• bioconductor-gramm4r

• bioconductor-variantexperiment

• bioconductor-hdf5array

• bioconductor-methylsig

• bioconductor-netsmooth

• bioconductor-rtcgatoolbox

• bioconductor-scdblfinder

• bioconductor-weitrix

• bioconductor-delayeddataframe

• bioconductor-scmeth

• r-monocle3

• bioconductor-chippeakanno

• bioconductor-scater

• bioconductor-scran

• bioconductor-singlecelltk

• bioconductor-descan2

• bioconductor-hipathia

• bioconductor-restfulse

• bioconductor-loomexperiment

• bioconductor-cager

• bioconductor-delayedmatrixstats

• bioconductor-genogam

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-delayedarray

and update with:

conda update bioconductor-delayedarray

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-delayedarray:<tag>

(see bioconductor-delayedarray/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-delayedarray/README.html)