recipe bioconductor-derfinderdata

Processed BigWigs from BrainSpan for examples

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/derfinderData.html

License:

Artistic-2.0

Recipe:

/bioconductor-derfinderdata/meta.yaml

Processed 22 samples from BrainSpan keeping only the information for chromosome 21. Data is stored in the BigWig format and is used for examples in other packages.

package bioconductor-derfinderdata

(downloads) docker_bioconductor-derfinderdata

versions:
2.20.0-0,  2.18.0-0,  2.15.0-0,  2.12.0-1,  2.12.0-0,  2.10.0-0,  2.8.1-0,  2.8.0-0,  2.7.1-0, 

2.20.0-0,  2.18.0-0,  2.15.0-0,  2.12.0-1,  2.12.0-0,  2.10.0-0,  2.8.1-0,  2.8.0-0,  2.7.1-0,  2.6.0-0,  2.4.0-0,  2.2.1-0,  2.2.0-0,  2.0.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-derfinderdata

and update with::

   mamba update bioconductor-derfinderdata

To create a new environment, run:

mamba create --name myenvname bioconductor-derfinderdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-derfinderdata:<tag>

(see `bioconductor-derfinderdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-derfinderdata/README.html)