recipe bioconductor-derfinderhelper

derfinder helper package

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/derfinderHelper.html

License:

Artistic-2.0

Recipe:

/bioconductor-derfinderhelper/meta.yaml

Links:

biotools: derfinderhelper

Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.

package bioconductor-derfinderhelper

(downloads) docker_bioconductor-derfinderhelper

versions:
1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.1-0,  1.24.0-0,  1.22.0-0, 

1.40.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.1-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.16.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

depends bioconductor-iranges:

>=2.40.0,<2.41.0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends r-base:

>=4.4,<4.5.0a0

depends r-matrix:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-derfinderhelper

and update with::

   mamba update bioconductor-derfinderhelper

To create a new environment, run:

mamba create --name myenvname bioconductor-derfinderhelper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-derfinderhelper:<tag>

(see `bioconductor-derfinderhelper/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-derfinderhelper/README.html)