- recipe bioconductor-desousa2013
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
- Homepage
https://bioconductor.org/packages/3.14/data/experiment/html/DeSousa2013.html
- License
Artistic-2.0
- Recipe
This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.
- package bioconductor-desousa2013¶
-
- Versions
1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.0-0
- Depends
bioconductor-affy
>=1.72.0,<1.73.0
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-consensusclusterplus
>=1.58.0,<1.59.0
bioconductor-frma
>=1.46.0,<1.47.0
bioconductor-frmatools
>=1.46.0,<1.47.0
bioconductor-hgu133plus2.db
>=3.13.0,<3.14.0
bioconductor-hgu133plus2frmavecs
>=1.5.0,<1.6.0
bioconductor-siggenes
>=1.68.0,<1.69.0
bioconductor-sva
>=3.42.0,<3.43.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-desousa2013
and update with:
conda update bioconductor-desousa2013
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-desousa2013:<tag>
(see bioconductor-desousa2013/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-desousa2013/README.html)