- recipe bioconductor-desousa2013
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/DeSousa2013.html
- License:
Artistic-2.0
- Recipe:
This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.
- package bioconductor-desousa2013¶
-
- Versions:
1.34.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.34.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.0-0
- Depends:
bioconductor-affy
>=1.76.0,<1.77.0
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-consensusclusterplus
>=1.62.0,<1.63.0
bioconductor-data-packages
>=20221111
bioconductor-frma
>=1.50.0,<1.51.0
bioconductor-frmatools
>=1.50.0,<1.51.0
bioconductor-hgu133plus2.db
>=3.13.0,<3.14.0
bioconductor-hgu133plus2frmavecs
>=1.5.0,<1.6.0
bioconductor-siggenes
>=1.72.0,<1.73.0
bioconductor-sva
>=3.46.0,<3.47.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-desousa2013
and update with:
conda update bioconductor-desousa2013
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-desousa2013:<tag>
(see bioconductor-desousa2013/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-desousa2013/README.html)