recipe bioconductor-desousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/DeSousa2013.html

License:

Artistic-2.0

Recipe:

/bioconductor-desousa2013/meta.yaml

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

package bioconductor-desousa2013

Versions:

1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1, 

1.34.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-consensusclusterplus >=1.62.0,<1.63.0

• bioconductor-data-packages >=20221111

• bioconductor-frma >=1.50.0,<1.51.0

• bioconductor-frmatools >=1.50.0,<1.51.0

• bioconductor-hgu133plus2.db >=3.13.0,<3.14.0

• bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0

• bioconductor-siggenes >=1.72.0,<1.73.0

• bioconductor-sva >=3.46.0,<3.47.0

• curl

• r-base >=4.2,<4.3.0a0

• r-cluster

• r-gplots

• r-pamr

• r-rgl

• r-rocr

• r-survival

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-desousa2013

and update with:

conda update bioconductor-desousa2013

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-desousa2013:<tag>

(see bioconductor-desousa2013/tags for valid values for <tag>)

Download stats

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