recipe bioconductor-desousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/DeSousa2013.html

License

Artistic-2.0

Recipe

/bioconductor-desousa2013/meta.yaml

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

package bioconductor-desousa2013

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-consensusclusterplus >=1.52.0,<1.53.0

• bioconductor-frma >=1.40.0,<1.41.0

• bioconductor-frmatools >=1.40.0,<1.41.0

• bioconductor-hgu133plus2.db >=3.2.0,<3.3.0

• bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0

• bioconductor-siggenes >=1.62.0,<1.63.0

• bioconductor-sva >=3.36.0,<3.37.0

• curl >=7.69.1,<8.0a0

• r-base >=4.0,<4.1.0a0

• r-cluster

• r-gplots

• r-pamr

• r-rgl

• r-rocr

• r-survival

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-desousa2013

and update with:

conda update bioconductor-desousa2013

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-desousa2013:<tag>

(see bioconductor-desousa2013/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-desousa2013/README.html)