recipe bioconductor-desousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Homepage

https://bioconductor.org/packages/3.10/data/experiment/html/DeSousa2013.html

License

Artistic-2.0

Recipe

/bioconductor-desousa2013/meta.yaml

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

package bioconductor-desousa2013

Versions

1.22.0-0, 1.20.0-1, 1.18.0-0

Depends

• bioconductor-affy >=1.64.0,<1.65.0

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-consensusclusterplus >=1.50.0,<1.51.0

• bioconductor-frma >=1.38.0,<1.39.0

• bioconductor-frmatools >=1.38.0,<1.39.0

• bioconductor-hgu133plus2.db >=3.2.0,<3.3.0

• bioconductor-hgu133plus2frmavecs >=1.5.0,<1.6.0

• bioconductor-siggenes >=1.60.0,<1.61.0

• bioconductor-sva >=3.34.0,<3.35.0

• curl >=7.65.3,<8.0a0

• r-base >=3.6,<3.7.0a0

• r-cluster

• r-gplots

• r-pamr

• r-rgl

• r-rocr

• r-survival

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-desousa2013

and update with:

conda update bioconductor-desousa2013

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-desousa2013:<tag>

(see bioconductor-desousa2013/tags for valid values for <tag>)

Link to this page

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