recipe bioconductor-dialignr

Dynamic Programming Based Alignment of MS2 Chromatograms

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DIAlignR.html

License:

GPL-3

Recipe:

/bioconductor-dialignr/meta.yaml

Links:

usegalaxy-eu: dialignr

To obtain unbiased proteome coverage from a biological sample, mass-spectrometer is operated in Data Independent Acquisition (DIA) mode. Alignment of these DIA runs establishes consistency and less missing values in complete data-matrix. This package implements dynamic programming with affine gap penalty based approach for pair-wise alignment of analytes. A hybrid approach of global alignment (through MS2 features) and local alignment (with MS2 chromatograms) is implemented in this tool.

package bioconductor-dialignr

(downloads) docker_bioconductor-dialignr

Versions:

2.6.0-02.2.0-22.2.0-12.2.0-02.0.0-01.2.0-11.2.0-01.0.5-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dialignr

and update with:

conda update bioconductor-dialignr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dialignr:<tag>

(see bioconductor-dialignr/tags for valid values for <tag>)

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