recipe bioconductor-dialignr

Dynamic Programming Based Alignment of MS2 Chromatograms

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DIAlignR.html

License:

GPL-3

Recipe:

/bioconductor-dialignr/meta.yaml

Links:

usegalaxy-eu: dialignr

To obtain unbiased proteome coverage from a biological sample, mass-spectrometer is operated in Data Independent Acquisition (DIA) mode. Alignment of these DIA runs establishes consistency and less missing values in complete data-matrix. This package implements dynamic programming with affine gap penalty based approach for pair-wise alignment of analytes. A hybrid approach of global alignment (through MS2 features) and local alignment (with MS2 chromatograms) is implemented in this tool.

package bioconductor-dialignr

Versions:

2.6.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.0.0-0,  1.2.0-1,  1.2.0-0,  1.0.5-0

Depends:

• bioconductor-mzr >=2.32.0,<2.33.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-ape

• r-base >=4.2,<4.3.0a0

• r-bit64

• r-data.table

• r-dbi

• r-dplyr

• r-ggplot2

• r-magrittr

• r-phangorn

• r-pracma

• r-rcpp

• r-rcppeigen

• r-reticulate

• r-rlang

• r-rmsnumpress

• r-rsqlite

• r-signal

• r-tidyr

• r-zoo >=1.8-3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dialignr

and update with:

conda update bioconductor-dialignr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dialignr:<tag>

(see bioconductor-dialignr/tags for valid values for <tag>)

Download stats

Link to this page

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