recipe bioconductor-diffutr

diffUTR: Streamlining differential exon and 3' UTR usage

Homepage

https://bioconductor.org/packages/3.14/bioc/html/diffUTR.html

License

GPL-3

Recipe

/bioconductor-diffutr/meta.yaml

The diffUTR package provides a uniform interface and plotting functions for limma/edgeR/DEXSeq -powered differential bin/exon usage. It includes in addition an improved version of the limma::diffSplice method. Most importantly, diffUTR further extends the application of these frameworks to differential UTR usage analysis using poly-A site databases.

package bioconductor-diffutr

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-complexheatmap >=2.10.0,<2.11.0

• bioconductor-dexseq >=1.40.0,<1.41.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-ensembldb >=2.18.0,<2.19.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-rsubread >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-matrixstats

• r-stringi

• r-viridislite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffutr

and update with:

conda update bioconductor-diffutr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffutr:<tag>

(see bioconductor-diffutr/tags for valid values for <tag>)

Download stats

Link to this page

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