- recipe bioconductor-diffutr
diffUTR: Streamlining differential exon and 3' UTR usage
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/diffUTR.html
- License:
GPL-3
- Recipe:
The diffUTR package provides a uniform interface and plotting functions for limma/edgeR/DEXSeq -powered differential bin/exon usage. It includes in addition an improved version of the limma::diffSplice method. Most importantly, diffUTR further extends the application of these frameworks to differential UTR usage analysis using poly-A site databases.
- package bioconductor-diffutr¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-complexheatmap
>=2.14.0,<2.15.0
bioconductor-dexseq
>=1.44.0,<1.45.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-ensembldb
>=2.22.0,<2.23.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-rsubread
>=2.12.0,<2.13.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-diffutr
and update with:
conda update bioconductor-diffutr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-diffutr:<tag>
(see bioconductor-diffutr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-diffutr/README.html)