recipe bioconductor-diggitdata

Example data for the diggit package



GPL (>=2)



This package provides expression profile and CNV data for glioblastoma from TCGA, and transcriptional and post-translational regulatory networks assembled with the ARACNe and MINDy algorithms, respectively.

package bioconductor-diggitdata

(downloads) docker_bioconductor-diggitdata



depends bioconductor-biobase:


depends bioconductor-data-packages:


depends bioconductor-viper:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-diggitdata

and update with::

   mamba update bioconductor-diggitdata

To create a new environment, run:

mamba create --name myenvname bioconductor-diggitdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-diggitdata/tags`_ for valid values for ``<tag>``)

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