recipe bioconductor-dmelsgi

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/DmelSGI.html

License:

Artistic-2.0

Recipe:

/bioconductor-dmelsgi/meta.yaml

The package contains the experimental data and documented source code of the manuscript "Fischer et al., A Map of Directional Genetic Interactions in a Metazoan Cell, eLife, 2015, in Press.". The vignette code generates all figures in the paper.

package bioconductor-dmelsgi

(downloads) docker_bioconductor-dmelsgi

versions:
1.34.0-0,  1.32.0-0,  1.29.1-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0, 

1.34.0-0,  1.32.0-0,  1.29.1-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends bioconductor-rhdf5:

>=2.46.0,<2.47.0

depends curl:

depends r-abind:

depends r-base:

>=4.3,<4.4.0a0

depends r-gplots:

depends r-igraph:

depends r-knitr:

depends r-tsp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-dmelsgi

and update with::

   mamba update bioconductor-dmelsgi

To create a new environment, run:

mamba create --name myenvname bioconductor-dmelsgi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-dmelsgi:<tag>

(see `bioconductor-dmelsgi/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-dmelsgi/README.html)