recipe bioconductor-dnazoodata

DNA Zoo data package






DNAZooData is a data package giving programmatic access to genome assemblies and Hi-C contact matrices uniformly processed by the [DNA Zoo Consortium]( The matrices are available in the multi-resolution `.hic` format. A URL to corrected genome assemblies in `.fastq` format is also provided to the end-user.

package bioconductor-dnazoodata

(downloads) docker_bioconductor-dnazoodata



depends bioconductor-biocfilecache:


depends bioconductor-data-packages:


depends bioconductor-hicexperiment:


depends bioconductor-s4vectors:


depends curl:

depends r-base:


depends r-rjson:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-dnazoodata

and update with::

   mamba update bioconductor-dnazoodata

To create a new environment, run:

mamba create --name myenvname bioconductor-dnazoodata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-dnazoodata/tags`_ for valid values for ``<tag>``)

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