recipe bioconductor-dominoeffect

Identification and Annotation of Protein Hotspot Residues

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/DominoEffect.html

License:

GPL (>= 3)

Recipe:

/bioconductor-dominoeffect/meta.yaml

The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.

package bioconductor-dominoeffect

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.1-0, 

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.1-0,  1.2.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-data.table

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dominoeffect

and update with:

conda update bioconductor-dominoeffect

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dominoeffect:<tag>

(see bioconductor-dominoeffect/tags for valid values for <tag>)

Download stats

Link to this page

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