- recipe bioconductor-dorothea
Collection Of Human And Mouse TF Regulons
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/dorothea.html
- License:
GPL-3 + file LICENSE
- Recipe:
DoRothEA is a gene regulatory network containing signed transcription factor (TF) - target gene interactions. DoRothEA regulons, the collection of a TF and its transcriptional targets, were curated and collected from different types of evidence for both human and mouse. A confidence level was assigned to each TF-target interaction based on the number of supporting evidence.
- package bioconductor-dorothea¶
-
- Versions:
1.10.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.1-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-bcellviper
>=1.34.0,<1.35.0
bioconductor-data-packages
>=20221105
bioconductor-viper
>=1.32.0,<1.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-dorothea
and update with:
conda update bioconductor-dorothea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dorothea:<tag>
(see bioconductor-dorothea/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dorothea/README.html)