recipe bioconductor-dorothea

Collection Of Human And Mouse TF Regulons

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/dorothea.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-dorothea/meta.yaml

This package contains human and mouse TF regulons. The human regulons were curated and collected from different types of evidence such as literature curated resources, ChIP-seq peaks, TF binding site motifs and interactions inferred directly from gene expression. The mouse regulons were constructed by mapping the human gene symbols to their orthologs in mice. Those regulons can be coupled with any statistical method that aims to analyse gene sets to infer TF activity from gene expression data. Preferably the statistical method viper is used.

package bioconductor-dorothea

(downloads) docker_bioconductor-dorothea

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dorothea

and update with:

conda update bioconductor-dorothea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dorothea:<tag>

(see bioconductor-dorothea/tags for valid values for <tag>)