recipe bioconductor-dorothea

Collection Of Human And Mouse TF Regulons

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/dorothea.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-dorothea/meta.yaml

DoRothEA is a gene regulatory network containing signed transcription factor (TF) - target gene interactions. DoRothEA regulons, the collection of a TF and its transcriptional targets, were curated and collected from different types of evidence for both human and mouse. A confidence level was assigned to each TF-target interaction based on the number of supporting evidence.

package bioconductor-dorothea

Versions:

1.10.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-bcellviper >=1.34.0,<1.35.0

• bioconductor-data-packages >=20221105

• bioconductor-viper >=1.32.0,<1.33.0

• curl

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-magrittr

Required By:

• bioconductor-cosmosr

• bioconductor-easier

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dorothea

and update with:

conda update bioconductor-dorothea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dorothea:<tag>

(see bioconductor-dorothea/tags for valid values for <tag>)

Download stats

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