recipe bioconductor-doscheda

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Doscheda.html

License

GPL-3

Recipe

/bioconductor-doscheda/meta.yaml

package bioconductor-doscheda

(downloads) docker_bioconductor-doscheda

Versions

1.4.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-vsn

>=3.50.0,<3.51.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-calibrate

Depends r-corrgram

Depends r-d3heatmap

Depends r-drc

Depends r-dt

Depends r-ggplot2

Depends r-gridextra

Depends r-httr

Depends r-jsonlite

Depends r-matrixstats

Depends r-prodlim

Depends r-readxl

Depends r-reshape2

Depends r-shiny

Depends r-shinydashboard

Depends r-stringr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-doscheda

and update with:

conda update bioconductor-doscheda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-doscheda:<tag>

(see bioconductor-doscheda/tags for valid values for <tag>)