- recipe bioconductor-drimseq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/DRIMSeq.html
- License
GPL (>= 3)
- Recipe
- Links
biotools: drimseq
The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.
- package bioconductor-drimseq¶
-
- Versions
1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-drimseq
and update with:
conda update bioconductor-drimseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-drimseq:<tag>
(see bioconductor-drimseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-drimseq/README.html)