bioconductor-drimseq

downloads

The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.

Home http://bioconductor.org/packages/3.7/bioc/html/DRIMSeq.html
Versions 1.8.0, 1.6.0
License GPL (>= 3)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-drimseq
Links biotools: drimseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-drimseq

and update with:

conda update bioconductor-drimseq

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-drimseq.