recipe bioconductor-drivernet

Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

Homepage

https://bioconductor.org/packages/3.11/bioc/html/DriverNet.html

License

GPL-3

Recipe

/bioconductor-drivernet/meta.yaml

Links

biotools: drivernet, doi: 10.1186/gb-2012-13-12-r124

DriverNet is a package to predict functional important driver genes in cancer by integrating genome data (mutation and copy number variation data) and transcriptome data (gene expression data). The different kinds of data are combined by an influence graph, which is a gene-gene interaction network deduced from pathway data. A greedy algorithm is used to find the possible driver genes, which may mutated in a larger number of patients and these mutations will push the gene expression values of the connected genes to some extreme values.

package bioconductor-drivernet

(downloads) docker_bioconductor-drivernet

Versions

1.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-drivernet

and update with:

conda update bioconductor-drivernet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-drivernet:<tag>

(see bioconductor-drivernet/tags for valid values for <tag>)