Package Recipe 'bioconductor-droplettestfiles'

recipe bioconductor-droplettestfiles

Test Files for Single-Cell Droplet Utilities

Homepage:: https://bioconductor.org/packages/3.16/data/experiment/html/DropletTestFiles.html
License:: GPL-3
Recipe:: /bioconductor-droplettestfiles/meta.yaml

Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.

package bioconductor-droplettestfiles¶

Versions:

1.8.0-0, 1.4.0-1, 1.4.0-0, 1.2.0-0, 1.0.0-1, 1.0.0-0

Depends:

bioconductor-annotationhub >=3.6.0,<3.7.0
bioconductor-data-packages >=20221108
bioconductor-experimenthub >=2.6.0,<2.7.0
bioconductor-s4vectors >=0.36.0,<0.37.0
curl
r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-droplettestfiles

and update with:

conda update bioconductor-droplettestfiles

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-droplettestfiles:<tag>

(see bioconductor-droplettestfiles/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-droplettestfiles/README.html)