recipe bioconductor-droplettestfiles

Test Files for Single-Cell Droplet Utilities






Assorted files generated from droplet-based single-cell protocols, to be used for testing functions in DropletUtils. Primarily intended for storing files that directly come out of processing pipelines like 10X Genomics' CellRanger software, prior to the formation of a SingleCellExperiment object. Unlike other packages, this is not designed to provide objects that are immediately ready for analysis.

package bioconductor-droplettestfiles

(downloads) docker_bioconductor-droplettestfiles



depends bioconductor-annotationhub:


depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends bioconductor-s4vectors:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-droplettestfiles

and update with::

   mamba update bioconductor-droplettestfiles

To create a new environment, run:

mamba create --name myenvname bioconductor-droplettestfiles

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-droplettestfiles/tags`_ for valid values for ``<tag>``)

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