recipe bioconductor-dstruct

Identifying differentially reactive regions from RNA structurome profiling data



GPL (>= 2)



dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.

package bioconductor-dstruct

(downloads) docker_bioconductor-dstruct



depends bioconductor-iranges:


depends bioconductor-s4vectors:


depends r-base:


depends r-ggplot2:

depends r-purrr:

depends r-reshape2:

depends r-rlang:

depends r-zoo:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-dstruct

and update with::

   mamba update bioconductor-dstruct

To create a new environment, run:

mamba create --name myenvname bioconductor-dstruct

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-dstruct/tags`_ for valid values for ``<tag>``)

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