recipe bioconductor-dta

Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DTA.html

License

Artistic-2.0

Recipe

/bioconductor-dta/meta.yaml

Links

biotools: dta, doi: 10.1093/bioinformatics/bts052

package bioconductor-dta

(downloads) docker_bioconductor-dta

Versions

2.30.0-0, 2.28.0-0, 2.26.0-0, 2.24.0-0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-lsd

Depends r-scatterplot3d

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-dta

and update with:

conda update bioconductor-dta

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dta:<tag>

(see bioconductor-dta/tags for valid values for <tag>)