recipe bioconductor-dune

Improving replicability in single-cell RNA-Seq cell type discovery

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Dune.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-dune/meta.yaml

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

package bioconductor-dune

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-aricode

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-gganimate

• r-ggplot2

• r-magrittr

• r-purrr

• r-rcolorbrewer

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-dune

and update with:

conda update bioconductor-dune

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-dune:<tag>

(see bioconductor-dune/tags for valid values for <tag>)

Download stats

Link to this page

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