recipe bioconductor-duoclustering2018

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Homepage

https://bioconductor.org/packages/3.13/data/experiment/html/DuoClustering2018.html

License

GPL (>=2)

Recipe

/bioconductor-duoclustering2018/meta.yaml

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

package bioconductor-duoclustering2018

Versions

1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-experimenthub >=2.0.0,<2.1.0

• curl >=7.77.0,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-ggthemes

• r-magrittr

• r-mclust

• r-purrr

• r-reshape2

• r-tidyr

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-duoclustering2018

and update with:

conda update bioconductor-duoclustering2018

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-duoclustering2018:<tag>

(see bioconductor-duoclustering2018/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-duoclustering2018/README.html)