recipe bioconductor-duoclustering2018

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/DuoClustering2018.html

License:

GPL (>=2)

Recipe:

/bioconductor-duoclustering2018/meta.yaml

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

package bioconductor-duoclustering2018

Versions:

1.16.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1, 

1.16.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• curl

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-ggthemes

• r-magrittr

• r-mclust

• r-purrr

• r-reshape2

• r-tidyr

• r-viridis

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-duoclustering2018

and update with:

conda update bioconductor-duoclustering2018

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-duoclustering2018:<tag>

(see bioconductor-duoclustering2018/tags for valid values for <tag>)

Download stats

Link to this page

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