-
recipe
bioconductor-dyebias
The GASSCO method for correcting for slide-dependent gene-specific dye bias
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/dyebias.html
- License
GPL-3
- Recipe
- Links
biotools: dyebias
Many two-colour hybridizations suffer from a dye bias that is both gene-specific and slide-specific. The former depends on the content of the nucleotide used for labeling; the latter depends on the labeling percentage. The slide-dependency was hitherto not recognized, and made addressing the artefact impossible. Given a reasonable number of dye-swapped pairs of hybridizations, or of same vs. same hybridizations, both the gene- and slide-biases can be estimated and corrected using the GASSCO method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009), doi:10.1038/msb.2009.21)
-
package
bioconductor-dyebias
¶ -
- Versions
1.50.0-0
,1.48.0-0
,1.46.0-0
,1.44.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-marray
>=1.68.0,<1.69.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-dyebias
and update with:
conda update bioconductor-dyebias
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-dyebias:<tag>
(see bioconductor-dyebias/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-dyebias/README.html)