-
recipe
bioconductor-easyrnaseq¶ Calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as ‘RPKM’ or by the ‘DESeq’ or ‘edgeR’ package.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/easyRNASeq.html
- License
Artistic-2.0
- Recipe
- Links
biotools: easyrnaseq
-
package
bioconductor-easyrnaseq¶ 
- Versions
2.18.2-0, 2.16.0-0, 2.14.0-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-biomart
>=2.38.0,<2.39.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-deseq
>=1.34.0,<1.35.0
- Depends bioconductor-edger
>=3.24.0,<3.25.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomeintervals
>=1.38.0,<1.39.0
- Depends bioconductor-genomicalignments
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-shortread
>=1.40.0,<1.41.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-locfit
- Depends r-lsd
>=3.0
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-easyrnaseq
and update with:
conda update bioconductor-easyrnaseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-easyrnaseq:<tag>
(see bioconductor-easyrnaseq/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-easyrnaseq/README.html)