recipe bioconductor-easyrnaseq

Calculates the coverage of high-throughput short-reads against a genome of reference and summarizes it per feature of interest (e.g. exon, gene, transcript). The data can be normalized as ‘RPKM’ or by the ‘DESeq’ or ‘edgeR’ package.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/easyRNASeq.html

License

Artistic-2.0

Recipe

/bioconductor-easyrnaseq/meta.yaml

Links

biotools: easyrnaseq

package bioconductor-easyrnaseq

(downloads) docker_bioconductor-easyrnaseq

Versions

2.20.0-1, 2.18.2-0, 2.16.0-0, 2.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-easyrnaseq

and update with:

conda update bioconductor-easyrnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-easyrnaseq:<tag>

(see bioconductor-easyrnaseq/tags for valid values for <tag>)