recipe bioconductor-ebimage

Image processing and analysis toolbox for R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/EBImage.html

License:

LGPL

Recipe:

/bioconductor-ebimage/meta.yaml

Links:

biotools: ebimage

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

package bioconductor-ebimage

Versions:

4.40.0-1,  4.40.0-0,  4.36.0-2,  4.36.0-1,  4.36.0-0,  4.34.0-0,  4.32.0-1,  4.32.0-0,  4.30.0-0, 

4.40.0-1,  4.40.0-0,  4.36.0-2,  4.36.0-1,  4.36.0-0,  4.34.0-0,  4.32.0-1,  4.32.0-0,  4.30.0-0,  4.28.0-0,  4.26.0-1,  4.24.0-0,  4.22.1-0,  4.20.0-0,  4.18.3-0,  4.13.0-0,  4.12.2-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-abind

• r-base >=4.2,<4.3.0a0

• r-fftwtools >=0.9-7

• r-htmltools

• r-htmlwidgets

• r-jpeg

• r-locfit

• r-png

• r-rcurl

• r-tiff

Required By:

• bioconductor-simpleseg

• bioconductor-imagehts

• bioconductor-cytomapper

• bioconductor-hd2013sgi

• bioconductor-bioimagedbs

• bioconductor-fishalyser

• bioconductor-confess

• bioconductor-furrowseg

• bioconductor-yamss

• bioconductor-merfishdata

• bioconductor-sojourner

• bioconductor-synapsis

• bioconductor-heatmaps

• bioconductor-imcrtools

• bioconductor-flowcatchr

• bioconductor-bnbc

• bioconductor-cardinal

• bioconductor-crimage

• bioconductor-flowchic

• bioconductor-donapllp2013

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ebimage

and update with:

conda update bioconductor-ebimage

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ebimage:<tag>

(see bioconductor-ebimage/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ebimage/README.html)