recipe bioconductor-ebimage

Image processing and analysis toolbox for R

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/EBImage.html

License:

LGPL

Recipe:

/bioconductor-ebimage/meta.yaml

Links:

biotools: ebimage

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

package bioconductor-ebimage

versions:

4.44.0-0,  4.42.0-0,  4.40.0-1,  4.40.0-0,  4.36.0-2,  4.36.0-1,  4.36.0-0,  4.34.0-0,  4.32.0-1, 

4.44.0-0,  4.42.0-0,  4.40.0-1,  4.40.0-0,  4.36.0-2,  4.36.0-1,  4.36.0-0,  4.34.0-0,  4.32.0-1,  4.32.0-0,  4.30.0-0,  4.28.0-0,  4.26.0-1,  4.24.0-0,  4.22.1-0,  4.20.0-0,  4.18.3-0,  4.13.0-0,  4.12.2-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-biocgenerics:

>=0.48.1,<0.49.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-abind:

depends r-base:

>=4.3,<4.4.0a0

depends r-fftwtools:

>=0.9-7

depends r-htmltools:

depends r-htmlwidgets:

depends r-jpeg:

depends r-locfit:

depends r-png:

depends r-rcurl:

depends r-tiff:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ebimage

and update with::

   mamba update bioconductor-ebimage

To create a new environment, run:

mamba create --name myenvname bioconductor-ebimage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ebimage:<tag>

(see `bioconductor-ebimage/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ebimage/README.html)