recipe bioconductor-ecolitk

Meta-data and tools for E. coli



GPL (>= 2)



Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

package bioconductor-ecolitk

(downloads) docker_bioconductor-ecolitk



depends bioconductor-biobase:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ecolitk

and update with::

   mamba update bioconductor-ecolitk

To create a new environment, run:

mamba create --name myenvname bioconductor-ecolitk

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-ecolitk/tags`_ for valid values for ``<tag>``)

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