-
recipe
bioconductor-edaseq
Exploratory Data Analysis and Normalization for RNA-Seq
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/EDASeq.html
- License
Artistic-2.0
- Recipe
- Links
biotools: edaseq
Numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).
-
package
bioconductor-edaseq
¶ -
- Versions
2.24.0-0
,2.22.0-0
,2.20.0-0
,2.18.0-1
,2.16.0-0
,2.14.1-0
,2.12.0-0
,2.10.0-0
,2.8.0-0
- Depends
bioconductor-annotationdbi
>=1.52.0,<1.53.0
bioconductor-aroma.light
>=3.20.0,<3.21.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biomart
>=2.46.0,<2.47.0
bioconductor-biostrings
>=2.58.0,<2.59.0
bioconductor-genomicfeatures
>=1.42.0,<1.43.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-rsamtools
>=2.6.0,<2.7.0
bioconductor-shortread
>=1.48.0,<1.49.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-edaseq
and update with:
conda update bioconductor-edaseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-edaseq:<tag>
(see bioconductor-edaseq/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-edaseq/README.html)