Package Recipe 'bioconductor-edaseq'

recipe bioconductor-edaseq¶

Numerical and graphical summaries of RNA-Seq read data. Within-lane normalization procedures to adjust for GC-content effect (or other gene-level effects) on read counts: loess robust local regression, global-scaling, and full-quantile normalization (Risso et al., 2011). Between-lane normalization procedures to adjust for distributional differences between lanes (e.g., sequencing depth): global-scaling and full-quantile normalization (Bullard et al., 2010).

Homepage: https://bioconductor.org/packages/3.9/bioc/html/EDASeq.html
License: Artistic-2.0
Recipe: /bioconductor-edaseq/meta.yaml
Links: biotools: edaseq

package bioconductor-edaseq¶

Versions

2.18.0-1, 2.16.0-0, 2.14.1-0, 2.12.0-0, 2.10.0-0, 2.8.0-0

Depends

bioconductor-annotationdbi >=1.46.0,<1.47.0
bioconductor-aroma.light >=3.14.0,<3.15.0
bioconductor-biobase >=2.44.0,<2.45.0
bioconductor-biocgenerics >=0.30.0,<0.31.0
bioconductor-biomart >=2.40.0,<2.41.0
bioconductor-biostrings >=2.52.0,<2.53.0
bioconductor-deseq >=1.36.0,<1.37.0
bioconductor-genomicfeatures >=1.36.0,<1.37.0
bioconductor-genomicranges >=1.36.0,<1.37.0
bioconductor-iranges >=2.18.0,<2.19.0
bioconductor-rsamtools >=2.0.0,<2.1.0
bioconductor-shortread >=1.42.0,<1.43.0
r-base >=3.6,<3.7.0a0
r-biocmanager

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-edaseq

and update with:

conda update bioconductor-edaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-edaseq:<tag>

(see bioconductor-edaseq/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-edaseq/README.html)