recipe bioconductor-eds

eds: Low-level reader for Alevin EDS format

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/eds.html

License:

GPL-2

Recipe:

/bioconductor-eds/meta.yaml

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

package bioconductor-eds

versions:

1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-matrix:

depends r-rcpp:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-eds

and update with::

   mamba update bioconductor-eds

To create a new environment, run:

mamba create --name myenvname bioconductor-eds

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-eds:<tag>

(see `bioconductor-eds/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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