recipe bioconductor-egad

Extending guilt by association by degree

Homepage

https://bioconductor.org/packages/3.10/bioc/html/EGAD.html

License

GPL-2

Recipe

/bioconductor-egad/meta.yaml

The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.

package bioconductor-egad

Versions

1.14.0-0, 1.12.0-1, 1.10.0-0

Depends

• bioconductor-affy >=1.64.0,<1.65.0

• bioconductor-arrayqualitymetrics >=3.42.0,<3.43.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-geoquery >=2.54.0,<2.55.0

• bioconductor-impute >=1.60.0,<1.61.0

• bioconductor-limma >=3.42.0,<3.43.0

• r-base >=3.6,<3.7.0a0

• r-gplots

• r-igraph

• r-mass

• r-matrix

• r-plyr

• r-rcolorbrewer

• r-rcurl

• r-zoo

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-egad

and update with:

conda update bioconductor-egad

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-egad:<tag>

(see bioconductor-egad/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-egad/README.html)