- recipe bioconductor-egsea
Ensemble of Gene Set Enrichment Analyses
- Homepage:
- License:
GPL-3
- Recipe:
- Links:
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
- package bioconductor-egsea¶
-
- Versions:
1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-1
,1.10.0-0
,1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.1-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-egseadata
>=1.26.0,<1.27.0
bioconductor-gage
>=2.48.0,<2.49.0
bioconductor-globaltest
>=5.52.0,<5.53.0
bioconductor-gsva
>=1.46.0,<1.47.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-org.hs.eg.db
>=3.16.0,<3.17.0
bioconductor-org.mm.eg.db
>=3.16.0,<3.17.0
bioconductor-org.rn.eg.db
>=3.16.0,<3.17.0
bioconductor-padog
>=1.40.0,<1.41.0
bioconductor-pathview
>=1.38.0,<1.39.0
bioconductor-safe
>=3.38.0,<3.39.0
bioconductor-topgo
>=2.50.0,<2.51.0
r-base
>=4.2,<4.3.0a0
r-ggplot2
>=1.0.0
r-gplots
>=2.14.2
r-htmlutils
>=0.1.5
r-hwriter
>=1.2.2
r-stringi
>=0.5.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-egsea
and update with:
conda update bioconductor-egsea
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-egsea:<tag>
(see bioconductor-egsea/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-egsea/README.html)