recipe bioconductor-egsea

Ensemble of Gene Set Enrichment Analyses

Homepage

https://bioconductor.org/packages/3.11/bioc/html/EGSEA.html

License

GPL-3

Recipe

/bioconductor-egsea/meta.yaml

Links

biotools: egsea, usegalaxy-eu: egsea

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

package bioconductor-egsea

Versions

1.16.0-0,  1.14.0-1,  1.12.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-edger >=3.30.0,<3.31.0

• bioconductor-egseadata >=1.16.0,<1.17.0

• bioconductor-gage >=2.37.0,<2.38.0

• bioconductor-glimma >=1.16.0,<1.17.0

• bioconductor-globaltest >=5.42.0,<5.43.0

• bioconductor-gsva >=1.36.0,<1.37.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-org.hs.eg.db >=3.11.0,<3.12.0

• bioconductor-org.mm.eg.db >=3.11.0,<3.12.0

• bioconductor-org.rn.eg.db >=3.11.0,<3.12.0

• bioconductor-padog >=1.30.0,<1.31.0

• bioconductor-pathview >=1.28.0,<1.29.0

• bioconductor-safe >=3.27.0,<3.28.0

• bioconductor-topgo >=2.40.0,<2.41.0

• r-base >=4.0,<4.1.0a0

• r-dt

• r-ggplot2 >=1.0.0

• r-gplots >=2.14.2

• r-htmlutils >=0.1.5

• r-htmlwidgets

• r-hwriter >=1.2.2

• r-metap

• r-plotly

• r-rcolorbrewer

• r-stringi >=0.5.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-egsea

and update with:

conda update bioconductor-egsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-egsea:<tag>

(see bioconductor-egsea/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-egsea/README.html)