Package Recipe 'bioconductor-egsea'

recipe bioconductor-egsea¶

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/EGSEA.html
License: GPL-3
Recipe: /bioconductor-egsea/meta.yaml
Links: biotools: egsea

package bioconductor-egsea¶

Versions: 1.10.0-0, 1.8.0-0, 1.6.0-0
Depends bioconductor-annotationdbi: >=1.44.0,<1.45.0
Depends bioconductor-biobase: >=2.42.0,<2.43.0
Depends bioconductor-edger: >=3.24.0,<3.25.0
Depends bioconductor-egseadata: >=1.10.0,<1.11.0
Depends bioconductor-gage: >=2.32.0,<2.33.0
Depends bioconductor-glimma: >=1.10.0,<1.11.0
Depends bioconductor-globaltest: >=5.36.0,<5.37.0
Depends bioconductor-gsva: >=1.30.0,<1.31.0
Depends bioconductor-limma: >=3.38.0,<3.39.0
Depends bioconductor-org.hs.eg.db: >=3.7.0,<3.8.0
Depends bioconductor-org.mm.eg.db: >=3.7.0,<3.8.0
Depends bioconductor-org.rn.eg.db: >=3.7.0,<3.8.0
Depends bioconductor-padog: >=1.24.0,<1.25.0
Depends bioconductor-pathview: >=1.22.0,<1.23.0
Depends bioconductor-safe: >=3.22.0,<3.23.0
Depends bioconductor-topgo: >=2.34.0,<2.35.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-dt
Depends r-ggplot2: >=1.0.0
Depends r-gplots: >=2.14.2
Depends r-htmlutils: >=0.1.5
Depends r-htmlwidgets
Depends r-hwriter: >=1.2.2
Depends r-metap
Depends r-plotly
Depends r-rcolorbrewer
Depends r-stringi: >=0.5.0
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-egsea

and update with:

conda update bioconductor-egsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-egsea:<tag>

(see bioconductor-egsea/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-egsea/README.html)