- recipe bioconductor-eisar
Exon-Intron Split Analysis (EISA) in R
- Homepage:
- License:
GPL-3
- Recipe:
Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure changes in mature RNA and pre-mRNA reads across different experimental conditions to quantify transcriptional and post-transcriptional regulation of gene expression. For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR implements the major steps of EISA in R.
- package bioconductor-eisar¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-eisar
and update with:
conda update bioconductor-eisar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-eisar:<tag>
(see bioconductor-eisar/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-eisar/README.html)