recipe bioconductor-eisar

Exon-Intron Split Analysis (EISA) in R

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/eisaR.html

License:

GPL-3

Recipe:

/bioconductor-eisar/meta.yaml

Exon-intron split analysis (EISA) uses ordinary RNA-seq data to measure changes in mature RNA and pre-mRNA reads across different experimental conditions to quantify transcriptional and post-transcriptional regulation of gene expression. For details see Gaidatzis et al., Nat Biotechnol 2015. doi: 10.1038/nbt.3269. eisaR implements the major steps of EISA in R.

package bioconductor-eisar

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-eisar

and update with:

conda update bioconductor-eisar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-eisar:<tag>

(see bioconductor-eisar/tags for valid values for <tag>)

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