recipe bioconductor-emtdata

An ExperimentHub Package for data sets with an Epithelial to Mesenchymal Transition (EMT)

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/emtdata.html

License:

GPL-3

Recipe:

/bioconductor-emtdata/meta.yaml

This package provides pre-processed RNA-seq data where the epithelial to mesenchymal transition was induced on cell lines. These data come from three publications Cursons et al. (2015), Cursons etl al. (2018) and Foroutan et al. (2017). In each of these publications, EMT was induces across multiple cell lines following treatment by TGFb among other stimulants. This data will be useful in determining the regulatory programs modified in order to achieve an EMT. Data were processed by the Davis laboratory in the Bioinformatics division at WEHI.

package bioconductor-emtdata

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221109

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-emtdata

and update with:

conda update bioconductor-emtdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-emtdata:<tag>

(see bioconductor-emtdata/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-emtdata/README.html)