recipe bioconductor-encodexplorerdata

A compilation of ENCODE metadata

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/ENCODExplorerData.html

License:

Artistic-2.0

Recipe:

/bioconductor-encodexplorerdata/meta.yaml

This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.

package bioconductor-encodexplorerdata

(downloads) docker_bioconductor-encodexplorerdata

versions:
0.99.5-9,  0.99.5-8,  0.99.5-7,  0.99.5-6,  0.99.5-5,  0.99.5-4,  0.99.5-3,  0.99.5-2,  0.99.5-1, 

0.99.5-9,  0.99.5-8,  0.99.5-7,  0.99.5-6,  0.99.5-5,  0.99.5-4,  0.99.5-3,  0.99.5-2,  0.99.5-1,  0.99.5-0,  0.99.4-0,  0.99.1-1

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

depends r-data.table:

depends r-jsonlite:

depends r-rcurl:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-encodexplorerdata

and update with::

   mamba update bioconductor-encodexplorerdata

To create a new environment, run:

mamba create --name myenvname bioconductor-encodexplorerdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-encodexplorerdata:<tag>

(see `bioconductor-encodexplorerdata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-encodexplorerdata/README.html)