recipe bioconductor-enrichplot

Visualization of Functional Enrichment Result

Homepage:

https://bioconductor.org/packages/3.17/bioc/html/enrichplot.html

License:

Artistic-2.0

Recipe:

/bioconductor-enrichplot/meta.yaml

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.

package bioconductor-enrichplot

versions:

1.20.0-0,  1.18.0-0,  1.14.1-0,  1.12.0-0,  1.10.2-0,  1.10.0-0,  1.8.1-0,  1.6.0-0,  1.4.0-1, 

1.20.0-0,  1.18.0-0,  1.14.1-0,  1.12.0-0,  1.10.2-0,  1.10.0-0,  1.8.1-0,  1.6.0-0,  1.4.0-1,  1.2.0-0,  1.0.2-0

depends bioconductor-dose:

>=3.26.0,<3.27.0

depends bioconductor-ggtree:

>=3.8.0,<3.9.0

depends bioconductor-gosemsim:

>=2.26.0,<2.27.0

depends r-aplot:

>=0.1.4

depends r-base:

>=4.3,<4.4.0a0

depends r-ggnewscale:

depends r-ggplot2:

depends r-ggraph:

depends r-igraph:

depends r-magrittr:

depends r-plyr:

depends r-purrr:

depends r-rcolorbrewer:

depends r-reshape2:

depends r-rlang:

depends r-scatterpie:

depends r-shadowtext:

depends r-yulab.utils:

>=0.0.4

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-enrichplot

and update with::

   mamba update bioconductor-enrichplot

To create a new environment, run:

mamba create --name myenvname bioconductor-enrichplot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-enrichplot:<tag>

(see `bioconductor-enrichplot/tags`_ for valid values for ``<tag>``)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-enrichplot/README.html)