recipe bioconductor-epialleler

Fast, Epiallele-Aware Methylation Reporter

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/epialleleR.html

License:

Artistic-2.0

Recipe:

/bioconductor-epialleler/meta.yaml

Epialleles are specific DNA methylation patterns that are mitotically and/or meiotically inherited. This package calls hypermethylated epiallele frequencies at the level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map (BAM) files as an input. Other functionality includes computing the empirical cumulative distribution function for per-read beta values, and testing the significance of the association between epiallele methylation status and base frequencies at particular genomic positions (SNPs).

package bioconductor-epialleler

(downloads) docker_bioconductor-epialleler

Versions:

1.2.0-11.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-epialleler

and update with:

conda update bioconductor-epialleler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epialleler:<tag>

(see bioconductor-epialleler/tags for valid values for <tag>)

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