recipe bioconductor-epialleler

Fast, Epiallele-Aware Methylation Reporter

Homepage

https://bioconductor.org/packages/3.13/bioc/html/epialleleR.html

License

Artistic-2.0

Recipe

/bioconductor-epialleler/meta.yaml

Epialleles are specific DNA methylation patterns that are mitotically and/or meiotically inherited. This package calls hypermethylated epiallele frequencies at the level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map (BAM) files as an input. Other functionality includes computing the empirical cumulative distribution function for per-read beta values, and testing the significance of the association between epiallele methylation status and base frequencies at particular genomic positions (SNPs).

package bioconductor-epialleler

(downloads) docker_bioconductor-epialleler

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-epialleler

and update with:

conda update bioconductor-epialleler

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-epialleler:<tag>

(see bioconductor-epialleler/tags for valid values for <tag>)

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